Main
A. Haydeé Contreras Peruyero
Postdoctoral fellowship at Center of Sciences Mathematics - UNAM | Topological ang Geometric Data Analysis | Bioinformatics | Geometric Group Theory | Global Riemannian Geometry | Quantum Geometry and Topology
Education
Ph. D. in Science in Mathematics
Instituto de Matemáticas, UNAM
Mexico City, Mexico
2021 - 2016
- Dr. Pablo Suárez Serrato
- Thesis: Rigidez Cuasi-Isométrica en Variedades de Gráficas Superiores
Specialty in Applied Statistics
Instituto de Investigaciones en Matemáticas Aplicadas y en Sistemas
Mexico City, Mexico
2021 - 2020
- Grade: 9.25/10.
Master of Science in Mathematics
Instituto de Matemáticas, UNAM
Mexico City, Mexico
2016 - 2014
- Dr. Pablo Suárez Serrato
- Thesis: Sobre la geometría y la topología de las variedades de gráficas
- Grade: 9.67/10.
Bachelor’s Degree in Mathematics
Universidad Veracruzana
Veracruz, Mexico
2012 - 2007
- Dr. Jorge Luis López López
- Thesis: Triangulaciones de 3-variedades hiperbólicas que fibran sobre el círculo con fibra el toro con un agujero
- Grade: 9.4/10.
Appointments
Postdoctoral research DGAPA UNAM 2024
Centro de Ciencias Matemáticas, UNAM
Michoacan, Mexico
current - 2024
- Dr. Daniel Juan Pineda, Dra. Nelly Sélem Mojica, Dr. Jesús Hernández Hernández
- Aplicaciones de análisis topológico de datos e invariantes de cuasi-isometrías
2024 Summer Collaborators IAS
Institute of Advances Studies
Princeton, USA
2024
- Catherine Searle, Megan Kerr, Regina Rotman, Erin Griffin, Isabel Beach
- Existence Criteria for Compact Homogeneous Einstein Metrics
Postdoctoral research DGAPA UNAM 2023
Centro de Ciencias Matemáticas, UNAM
Michoacan, Mexico
2024 - 2023
- Dr. Daniel Juan Pineda, Dra. Nelly Sélem Mojica, Dr. Jesús Hernández Hernández
- TDA y Machine learning aplicado a Metagenómica e invariantes de Variedades de Gráficas
Postdoctoral research CONACyT Ciencia de Frontera 217392
Centro de Ciencias Matemáticas, UNAM
Michoacan, Mexico
2023 - 2022
- Dr. Jesús Hernández Hernández
- Propiedades invariantes de Variedades de Gráficas Superiores
Head of the Department of Basic Sciences
Instituto Tecnológico de Martínez de la Torre
Veracruz, Mexico
2022 - 2021
Publications(Selected)
Actinobacteria bioprospecting from ore-forming environments
N/A
N/A
2024
- Aguilar, C., Alwali, A., Mair, M., Rodriguez-Orduña, L., Contreras-Peruyero, H., Modi, R., Sélem-Mojica, N., Licona-Cassani, C. & Parkinson, E. I. Actinomycetota bioprospecting from ore-forming environments. Microbial Genomics, 10(5), 001253. ISNN 2057-5858, https://doi.org/10.1099/mgen.0.001253
Physicochemical Properties of Two Mexican Stingless Bee Honeys to Strengthen Their Biocultural Value
N/A
N/A
2024
- Xolalpa-Aroche, A., Hernández-Mena, D. I., Moguel-Chin, W. I., Contreras-Peruyero, H., Rivero-Cruz, B. E., Ortiz-Vázquez, E., & Delgado-Suárez, E. J. (2024). Physicochemical Properties of Two Mexican Stingless Bee Honeys to Strengthen Their Biocultural Value. Revista Brasileira de Farmacognosia, 1-11. https://doi.org/10.1007/s43450-024-00566-z
Multidisciplinary Workshop on Pangenomics and Topological Data Analysis
N/A
N/A
2024
- H. Contreras Peruyero, S. Guerrero-Flores, C. Zirión-Martínez, P. M. Mejía-Ponce, Marisol Navarro-Miranda, J. Abel Lovaco-Flores, J.M. Ibarra-Rodríguez, A. Pashkov, C. Licona-Cassani and N. Sélem-Mojica. Bioinformatics Advances, 2024;, vbae139 https://doi.org/10.1093/bioadv/vbae139
Preprints(Selected)
CAMDA 2023: finding patterns in urban microbiomes
N/A
N/A
2024
- Haydeé Contreras-Peruyero , Imanol Nuñez-Morales , Mirna Vázquez-Rosas-Landa , Daniel Santana-Quinteros , Antón Pashkov , Mario E. Carranza-Barragán , Rafael Perez-Estrada , Shaday Guerrero-Flores , Eugenio Balanzario , Victor Muñiz-Sánchez , Miguel Nakamura-Savoy , Leticia L. Ramírez-Ramírez and Nelly Selem-Mojica. Submitted June 2024
Topological data analysis captures Horizontal Gene Transfer in Antimicrobial Resistance gene families among clinically relevant bacteria
N/A
N/A
2024
- Shaday Guerrero-Flores , Haydeé Contreras-Peruyero, Jose Ibarra , Jose Abel Lovaco-Flores , Francisco Nieto , Fernando Fontove-Herrera and Nelly Selem-Mojica. Submitted July 2024
Fractal dimensions of complex networks: advocating for a topological approach
N/A
N/A
2024
- Rayna Andreeva, Haydeé Contreras-Peruyero, Sanjukta Krishnagopal, Nina Otter, Maria Antonietta Pascali, Elizabeth Thompson. Submitted August 2024
Teaching Experience (Selected)
Advanced Statistics Course: Machine Learning and Deep Geometric Learning
Centro de Ciencias Matemáticas, UNAM
Michoacan, Mexico
2024
- Graduate Course
- https://github.com/CursosPosgradoCCM/ML-GDL
Scientific Computing: Scientific computing for data analysis
Centro de Ciencias Matemáticas, UNAM
Michoacan, Mexico
2024
- Graduate Course
- https://haydeeperuyero.github.io/Computo_Cientifico/
Web pages with Rmarkdown and Github
Centro de Ciencias Matematicas (CCM), UNAM
Morelia, Mexico
2024
- Encuentro de R-Ladies Morelia y R-Ladies Querétaro
- https://r-ladies-morelia.github.io/project/webpage/
Data analysis - PYTHON, BASH Y GIT
Centro de Ciencias Matematicas (CCM), UNAM
Morelia, Mexico
2024
- Instructors: Haydeé Peruyero(Git), Shaday Guerrero (Bash), Miguel Magaña(Python), Software Carpentry Workshop
- https://miguel-mx.github.io/2024-01-24-ccm-unam-swc/
Taller de Metagenómica
TecNM Campus Chiná
Virtual
2024
- Instructors: Haydeé Peruyero(R and Metagenomics), Shaday Guerrero (Bash), Nelly Sélem(Metagenomics)
- https://haydeeperuyero.github.io/2024-08-26-metagenomics-workshop-online/
Topology advanced course: Applications of Topological Data Analysis
Centro de Ciencias Matemáticas, UNAM
Michoacan, Mexico
2023
- Graduate Course
- https://github.com/HaydeePeruyero/CursoA_Aplicaciones_TDA
Statistics seminar: Data Analysis with R
Centro de Ciencias Matemáticas, UNAM
Michoacan, Mexico
2023
- Graduate Course
- https://haydeeperuyero.github.io/Seminario_Estadistica/
Presentations with Markdown: Xaringan and Quarto revealjs
Centro de Ciencias Matematicas (CCM), UNAM
Virtual event
2023
- R-ladies Morelia
- https://r-ladies-morelia.github.io/Xaringan_RLadies2023/
dplyr y Rmarkdown con Latex
Centro de Ciencias Matematicas (CCM), UNAM
Virtual event
2022
- R-ladies Morelia
R for Reproducible Scientific Analysis
Centro de Ciencias Matematicas (CCM), UNAM
Virtual event
2022
- Helper for R-ladies Morelia
Teaching Assistant, Analytic Geometry II
Facultad de Ciencias, UNAM
Mexico City, Mexico
2021
- Professor José Crispín Ruíz Pantaleón
- https://github.com/appliedgeometry/Geometria-Analitica
Teaching Assistant, Analytic Geometry II
Facultad de Ciencias, UNAM
Mexico City, Mexico
2020
- Professor José Crispín Ruíz Pantaleón
- https://github.com/appliedgeometry/Geometria-Analitica
Teaching Assistant, Differential and Integral Calculus II
Facultad de Ciencias, UNAM
Mexico City, Mexico
2020
- Professor Oscar A. Garrido and Arturo Sánchez
Teaching Assistant, Analytic Geometry II
Facultad de Ciencias, UNAM
Mexico City, Mexico
2020
- Professor Pablo Suárez Serrato
- https://github.com/appliedgeometry/Geometria-Analitica
Teaching Assistant, Analytic Geometry I
Facultad de Ciencias, UNAM
Mexico City, Mexico
2019
- Professor Pablo Suárez Serrato
- https://github.com/appliedgeometry/Geometria-Analitica
Talks and Posters (Selected)
XIX Seminario de Matemáticas Aplicadas UATx
Talk
Tlaxcala, Mexico
2024
- Análisis Topológico de Datos aplicado a la transferencia horizontal de genes de resistencia antimicrobiana
- Co-authors: Shaday Guerrero-Flores, Nelly Sélem-Mojica. UATx Apizaco, Tlaxcala, September 23th
XXIV Escuela de Otoño (EOBM) y el XVII Encuentro Nacional (ENBM), of Bio-mathematics
Minicourse
Veracruz, Mexico
2023
- Aplicaciones de análisis topológico de datos a Pangenómica
- October 9 - 14
Taller Propedéutico de Ingreso al PCCM 2023
Talk
Michoacan, Mexico
2023
- Algunas aplicaciones relacionadas al análisis topológico de datos y aprendizaje geométrico profundo
- October 9th
31st Conference on Intelligent Systems for Molecular Biology and 22th European Conference On Computational Biology as part of the Annual International Conference on Critical Assessment of Massive Data Analysis
Poster
Lyon, France
2023
- Topology, regression and metapangenome enrich conventional microbiome analyses
- July 24 - 27
Décima Jornada de Geometría, Topología y Dinámica
Talk
Michoacan, Mexico
2023
- Algunos problemas relacionados al análisis topológico de datos y aprendizaje geométrico
- CCM, UNAM, June 16th,
Seminario FISMAT
Talk
Michoacan, Mexico
2022
- Algunos problemas relacionados al análisis topológico de datos y aprendizaje geométrico
- Facultad de Ciencias Físico Matemáticas de la Universidad Michoacana de San Nicolás de Hidalgo, November 15th
8th Mexican Workshop on Applied Geometry and Topology
Poster
Virtual
2022
- Topological and Geometric explorations of Autism fMRI connectomes
- Co-authors:Sebastian Pujalte Ojeda (Instituto de Fisiología Celular UNAM), Sophie Achard (Centre de recherche Inria Grenoble Rhone-Alpes), Pablo Suárez Serrato (Instituto de Matemáticas UNAM), November 10th
ISCB-Latin America SoIBio BioNetMX Conference on Bioinformatics 2022
Poster
Queretaro, Mexico
2022
- Topological data analysis applied to metagenomics and pangenomics data of Clavibacter
- Co-authors: Shaday Guerrero Flores (Centro de Ciencias Matemáticas-CIMAT), Nelly Selem Mojica (Centro de Ciencias Matemáticas), Noé Bárcenas Torres (Centro de Ciencias Matemáticas), Jesús Hernández Hernández (Centro de Ciencias matemáticas), Antonio Rieser (CIMAT), November 3rd
Science Communication (Selected)
Club Mate
Workshop
Michoacan, Mexico
current - 2023
- Participation in the mate club aimed at elementary and secondary school students
- CCM UNAM
Feria Infantil y Juvenil de Ciencias y Artes
Workshop
Michoacan, Mexico
2024
- Estereogramas
- May 25th
Feria de las Matemáticas, March 16th
N/A
Michoacan, Mexico
2024
- Taller de Papiroflexia Modular
- Mesa Redonda: ¿Qué hacemos cuentas? Son puros cuentos
PI Day in the Instituto Tecnológico Superior de Martínez de la Torre, March 14th
Talk
Veracruz, Mexico
2023
- Algunas aplicaciones relacionadas al análisis topológico de datos y aprendizaje geométrico
- ITSMT, Mtz. de la Torre.
11° Fiesta de las Ciencias y Humanidades
Workshop
Michoacan, Mexico
2023
- Lengua de Señas Mexicana (LSM) y Matemáticas, October 19th
- Biomatemáticas, October 20th
- UNAM Campus Morelia
10° Fiesta de las Ciencias y Humanidades
Workshop
Michoacan, Mexico
2022
- Lengua de Señas Mexicana (LSM) y Matemáticas, October 27th - 28th
- UNAM Campus Morelia
Research Experience (Selected)
Women in Computational Topology
Bernoulli Center EPFL
Lausanne, Switzerland
2023
- Studying self-similarity of complex networks with persistent magnitude
- Nina Otter, Maria Antonietta Pascali, Sanjukta Krishnagopal, Rayna Andreeva, Elizabeth Thompson. July 17 - July 21
Awards
1st place at the Annual International Conference on Critical Assessment of Massive Data Analysis
ISCB
Lyon, France
2023
- Anti-Microbial Resistance Prediction and Forensics in urban metagenomes
- July 2023
Mentee in the Mentoring in Action - Women and Girls in STEM Online programme
British Council, Inova Consultancy, WiTEC
Mexico
2022
- Humiko Yahaira Hernández Acosta
- April - June 2022
2nd place at the ISCB-La SOLBIO BIONETMX WIKIPEDIA COMPETITON
ISCB
Queretaro, Mexico
2022
- Matrices de distancias
- October, 2022
Synergistic Activities (Selected)
R Ladies Morelia
N/A
Michoacán, Mexico and hybrid
current - 2022
- Co-organizer of the sesions of R Ladies Morelia https://r-ladies-morelia.github.io/ https://www.meetup.com/es-ES/rladies-morelia/?eventOrigin=home_groups_you_organize
- CCM UNAM
Primer Encuentro de Mujeres en Topología, Geometrpia y sus Aplicaciones
N/A
Michoacán, Mexico
2024
- Co-organizer with Sandy Aguilar, Yesenia Villicaña Molina, Ferrán Valdez Webpage: https://www.matmor.unam.mx/encuentro-mujeres-topogeo/
- CCM UNAM, September 11th - 13th
Encuentro Nacional de R ladies México
N/A
Virtual
2023
- Co-organizer of Encuentro Nacional de R ladies México
- September 23
Hackaton Reto Critical Assessment of Massive Data (CAMDA)
N/A
Michoacan, Mexico
2023
- Co-organizer of Hackaton Reto Critical Assessment of Massive Data (CAMDA) de geolocalización de datos de microbioma
- CCM UNAM, June 3rd - 7th
Hackaton TDA
N/A
Michoacan, Mexico
2022
- Co-organizer of the hackaton Análisis Topológico de Datos en el Hackaton Aplicaciones de Matemáticas en problemas de datos biológicos
- CCM UNAM, November