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Programming Languages

Expertise: R and Rstudio, Python, Git/Github, Bash
Familiarity: SQL and PowerBI

Languages

Spanish - Native
English - B2
Korean - A2

Disclaimer

The source code is available at HaydeePeruyero/CV.

The extended version of my CV can be found in this link Extended CV

Last updated on 2024-10-02.

Main

A. Haydeé Contreras Peruyero

Postdoctoral fellowship at Center of Sciences Mathematics - UNAM | Topological ang Geometric Data Analysis | Bioinformatics | Geometric Group Theory | Global Riemannian Geometry | Quantum Geometry and Topology

Education

Ph. D. in Science in Mathematics

Instituto de Matemáticas, UNAM

Mexico City, Mexico

2021 - 2016

  • Dr. Pablo Suárez Serrato
  • Thesis: Rigidez Cuasi-Isométrica en Variedades de Gráficas Superiores

Specialty in Applied Statistics

Instituto de Investigaciones en Matemáticas Aplicadas y en Sistemas

Mexico City, Mexico

2021 - 2020

  • Grade: 9.25/10.

Master of Science in Mathematics

Instituto de Matemáticas, UNAM

Mexico City, Mexico

2016 - 2014

  • Dr. Pablo Suárez Serrato
  • Thesis: Sobre la geometría y la topología de las variedades de gráficas
  • Grade: 9.67/10.

Bachelor’s Degree in Mathematics

Universidad Veracruzana

Veracruz, Mexico

2012 - 2007

  • Dr. Jorge Luis López López
  • Thesis: Triangulaciones de 3-variedades hiperbólicas que fibran sobre el círculo con fibra el toro con un agujero
  • Grade: 9.4/10.

Appointments

Postdoctoral research DGAPA UNAM 2024

Centro de Ciencias Matemáticas, UNAM

Michoacan, Mexico

current - 2024

  • Dr. Daniel Juan Pineda, Dra. Nelly Sélem Mojica, Dr. Jesús Hernández Hernández
  • Aplicaciones de análisis topológico de datos e invariantes de cuasi-isometrías

2024 Summer Collaborators IAS

Institute of Advances Studies

Princeton, USA

2024

  • Catherine Searle, Megan Kerr, Regina Rotman, Erin Griffin, Isabel Beach
  • Existence Criteria for Compact Homogeneous Einstein Metrics

Postdoctoral research DGAPA UNAM 2023

Centro de Ciencias Matemáticas, UNAM

Michoacan, Mexico

2024 - 2023

  • Dr. Daniel Juan Pineda, Dra. Nelly Sélem Mojica, Dr. Jesús Hernández Hernández
  • TDA y Machine learning aplicado a Metagenómica e invariantes de Variedades de Gráficas

Postdoctoral research CONACyT Ciencia de Frontera 217392

Centro de Ciencias Matemáticas, UNAM

Michoacan, Mexico

2023 - 2022

  • Dr. Jesús Hernández Hernández
  • Propiedades invariantes de Variedades de Gráficas Superiores

Head of the Department of Basic Sciences

Instituto Tecnológico de Martínez de la Torre

Veracruz, Mexico

2022 - 2021

Publications(Selected)

Actinobacteria bioprospecting from ore-forming environments

N/A

N/A

2024

  • Aguilar, C., Alwali, A., Mair, M., Rodriguez-Orduña, L., Contreras-Peruyero, H., Modi, R., Sélem-Mojica, N., Licona-Cassani, C. & Parkinson, E. I. Actinomycetota bioprospecting from ore-forming environments. Microbial Genomics, 10(5), 001253. ISNN 2057-5858, https://doi.org/10.1099/mgen.0.001253

Physicochemical Properties of Two Mexican Stingless Bee Honeys to Strengthen Their Biocultural Value

N/A

N/A

2024

  • Xolalpa-Aroche, A., Hernández-Mena, D. I., Moguel-Chin, W. I., Contreras-Peruyero, H., Rivero-Cruz, B. E., Ortiz-Vázquez, E., & Delgado-Suárez, E. J. (2024). Physicochemical Properties of Two Mexican Stingless Bee Honeys to Strengthen Their Biocultural Value. Revista Brasileira de Farmacognosia, 1-11. https://doi.org/10.1007/s43450-024-00566-z

Multidisciplinary Workshop on Pangenomics and Topological Data Analysis

N/A

N/A

2024

  • H. Contreras Peruyero, S. Guerrero-Flores, C. Zirión-Martínez, P. M. Mejía-Ponce, Marisol Navarro-Miranda, J. Abel Lovaco-Flores, J.M. Ibarra-Rodríguez, A. Pashkov, C. Licona-Cassani and N. Sélem-Mojica. Bioinformatics Advances, 2024;, vbae139 https://doi.org/10.1093/bioadv/vbae139

Preprints(Selected)

CAMDA 2023: finding patterns in urban microbiomes

N/A

N/A

2024

  • Haydeé Contreras-Peruyero , Imanol Nuñez-Morales , Mirna Vázquez-Rosas-Landa , Daniel Santana-Quinteros , Antón Pashkov , Mario E. Carranza-Barragán , Rafael Perez-Estrada , Shaday Guerrero-Flores , Eugenio Balanzario , Victor Muñiz-Sánchez , Miguel Nakamura-Savoy , Leticia L. Ramírez-Ramírez and Nelly Selem-Mojica. Submitted June 2024

Topological data analysis captures Horizontal Gene Transfer in Antimicrobial Resistance gene families among clinically relevant bacteria

N/A

N/A

2024

  • Shaday Guerrero-Flores , Haydeé Contreras-Peruyero, Jose Ibarra , Jose Abel Lovaco-Flores , Francisco Nieto , Fernando Fontove-Herrera and Nelly Selem-Mojica. Submitted July 2024

Fractal dimensions of complex networks: advocating for a topological approach

N/A

N/A

2024

  • Rayna Andreeva, Haydeé Contreras-Peruyero, Sanjukta Krishnagopal, Nina Otter, Maria Antonietta Pascali, Elizabeth Thompson. Submitted August 2024




Teaching Experience (Selected)

Advanced Statistics Course: Machine Learning and Deep Geometric Learning

Centro de Ciencias Matemáticas, UNAM

Michoacan, Mexico

2024

Scientific Computing: Scientific computing for data analysis

Centro de Ciencias Matemáticas, UNAM

Michoacan, Mexico

2024

Web pages with Rmarkdown and Github

Centro de Ciencias Matematicas (CCM), UNAM

Morelia, Mexico

2024

Data analysis - PYTHON, BASH Y GIT

Centro de Ciencias Matematicas (CCM), UNAM

Morelia, Mexico

2024

Taller de Metagenómica

TecNM Campus Chiná

Virtual

2024

Topology advanced course: Applications of Topological Data Analysis

Centro de Ciencias Matemáticas, UNAM

Michoacan, Mexico

2023

Statistics seminar: Data Analysis with R

Centro de Ciencias Matemáticas, UNAM

Michoacan, Mexico

2023

Presentations with Markdown: Xaringan and Quarto revealjs

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2023

dplyr y Rmarkdown con Latex

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2022

  • R-ladies Morelia

R for Reproducible Scientific Analysis

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2022

  • Helper for R-ladies Morelia

Teaching Assistant, Analytic Geometry II

Facultad de Ciencias, UNAM

Mexico City, Mexico

2021

Teaching Assistant, Analytic Geometry II

Facultad de Ciencias, UNAM

Mexico City, Mexico

2020

Teaching Assistant, Differential and Integral Calculus II

Facultad de Ciencias, UNAM

Mexico City, Mexico

2020

  • Professor Oscar A. Garrido and Arturo Sánchez

Teaching Assistant, Analytic Geometry II

Facultad de Ciencias, UNAM

Mexico City, Mexico

2020

Teaching Assistant, Analytic Geometry I

Facultad de Ciencias, UNAM

Mexico City, Mexico

2019

Talks and Posters (Selected)

XIX Seminario de Matemáticas Aplicadas UATx

Talk

Tlaxcala, Mexico

2024

  • Análisis Topológico de Datos aplicado a la transferencia horizontal de genes de resistencia antimicrobiana
  • Co-authors: Shaday Guerrero-Flores, Nelly Sélem-Mojica. UATx Apizaco, Tlaxcala, September 23th

Escuela de Matemáticas de América Latina y el Caribe Cuernavaca 2024

Talk

Morelos, Mexico

2024

  • Analizando datos con topología y geometría
  • Co-authors: Shaday Guerrero-Flores, Nelly Sélem-Mojica. IMATE Cuernavaca, June 18th

XXIV Escuela de Otoño (EOBM) y el XVII Encuentro Nacional (ENBM), of Bio-mathematics

Minicourse

Veracruz, Mexico

2023

  • Aplicaciones de análisis topológico de datos a Pangenómica
  • October 9 - 14

Taller Propedéutico de Ingreso al PCCM 2023

Talk

Michoacan, Mexico

2023

  • Algunas aplicaciones relacionadas al análisis topológico de datos y aprendizaje geométrico profundo
  • October 9th

31st Conference on Intelligent Systems for Molecular Biology and 22th European Conference On Computational Biology as part of the Annual International Conference on Critical Assessment of Massive Data Analysis

Poster

Lyon, France

2023

  • Topology, regression and metapangenome enrich conventional microbiome analyses
  • July 24 - 27

Décima Jornada de Geometría, Topología y Dinámica

Talk

Michoacan, Mexico

2023

  • Algunos problemas relacionados al análisis topológico de datos y aprendizaje geométrico
  • CCM, UNAM, June 16th,

Seminario FISMAT

Talk

Michoacan, Mexico

2022

  • Algunos problemas relacionados al análisis topológico de datos y aprendizaje geométrico
  • Facultad de Ciencias Físico Matemáticas de la Universidad Michoacana de San Nicolás de Hidalgo, November 15th

8th Mexican Workshop on Applied Geometry and Topology

Poster

Virtual

2022

  • Topological and Geometric explorations of Autism fMRI connectomes
  • Co-authors:Sebastian Pujalte Ojeda (Instituto de Fisiología Celular UNAM), Sophie Achard (Centre de recherche Inria Grenoble Rhone-Alpes), Pablo Suárez Serrato (Instituto de Matemáticas UNAM), November 10th

ISCB-Latin America SoIBio BioNetMX Conference on Bioinformatics 2022

Poster

Queretaro, Mexico

2022

  • Topological data analysis applied to metagenomics and pangenomics data of Clavibacter
  • Co-authors: Shaday Guerrero Flores (Centro de Ciencias Matemáticas-CIMAT), Nelly Selem Mojica (Centro de Ciencias Matemáticas), Noé Bárcenas Torres (Centro de Ciencias Matemáticas), Jesús Hernández Hernández (Centro de Ciencias matemáticas), Antonio Rieser (CIMAT), November 3rd

Science Communication (Selected)

Club Mate

Workshop

Michoacan, Mexico

current - 2023

  • Participation in the mate club aimed at elementary and secondary school students
  • CCM UNAM

Feria Infantil y Juvenil de Ciencias y Artes

Workshop

Michoacan, Mexico

2024

  • Estereogramas
  • May 25th

Feria de las Matemáticas, March 16th

N/A

Michoacan, Mexico

2024

  • Taller de Papiroflexia Modular
  • Mesa Redonda: ¿Qué hacemos cuentas? Son puros cuentos

PI Day in the Instituto Tecnológico Superior de Martínez de la Torre, March 14th

Talk

Veracruz, Mexico

2023

  • Algunas aplicaciones relacionadas al análisis topológico de datos y aprendizaje geométrico
  • ITSMT, Mtz. de la Torre.

11° Fiesta de las Ciencias y Humanidades

Workshop

Michoacan, Mexico

2023

  • Lengua de Señas Mexicana (LSM) y Matemáticas, October 19th
  • Biomatemáticas, October 20th
  • UNAM Campus Morelia

10° Fiesta de las Ciencias y Humanidades

Workshop

Michoacan, Mexico

2022

  • Lengua de Señas Mexicana (LSM) y Matemáticas, October 27th - 28th
  • UNAM Campus Morelia

Research Experience (Selected)

Women in Computational Topology

Bernoulli Center EPFL

Lausanne, Switzerland

2023

  • Studying self-similarity of complex networks with persistent magnitude
  • Nina Otter, Maria Antonietta Pascali, Sanjukta Krishnagopal, Rayna Andreeva, Elizabeth Thompson. July 17 - July 21

Awards

1st place at the Annual International Conference on Critical Assessment of Massive Data Analysis

ISCB

Lyon, France

2023

  • Anti-Microbial Resistance Prediction and Forensics in urban metagenomes
  • July 2023

Mentee in the Mentoring in Action - Women and Girls in STEM Online programme

British Council, Inova Consultancy, WiTEC

Mexico

2022

  • Humiko Yahaira Hernández Acosta
  • April - June 2022

2nd place at the ISCB-La SOLBIO BIONETMX WIKIPEDIA COMPETITON

ISCB

Queretaro, Mexico

2022

  • Matrices de distancias
  • October, 2022

Synergistic Activities (Selected)

R Ladies Morelia

N/A

Michoacán, Mexico and hybrid

current - 2022

Primer Encuentro de Mujeres en Topología, Geometrpia y sus Aplicaciones

N/A

Michoacán, Mexico

2024

Encuentro Nacional de R ladies México

N/A

Virtual

2023

  • Co-organizer of Encuentro Nacional de R ladies México
  • September 23

Hackaton Reto Critical Assessment of Massive Data (CAMDA)

N/A

Michoacan, Mexico

2023

  • Co-organizer of Hackaton Reto Critical Assessment of Massive Data (CAMDA) de geolocalización de datos de microbioma
  • CCM UNAM, June 3rd - 7th

Hackaton TDA

N/A

Michoacan, Mexico

2022

  • Co-organizer of the hackaton Análisis Topológico de Datos en el Hackaton Aplicaciones de Matemáticas en problemas de datos biológicos
  • CCM UNAM, November